- GITHUB MAC COMMAND LINE TUTORIAL HOW TO
- GITHUB MAC COMMAND LINE TUTORIAL INSTALL
- GITHUB MAC COMMAND LINE TUTORIAL CODE
- GITHUB MAC COMMAND LINE TUTORIAL DOWNLOAD
GITHUB MAC COMMAND LINE TUTORIAL CODE
If you’re unfamiliar with what’s going on in any of these code blocks below, and want to be more familiar, run through the Unix crash course and modifying your PATH pages sometime ?
GITHUB MAC COMMAND LINE TUTORIAL INSTALL
You can check to see if this is in your PATH already like this:Įcho 'export PATH="$PATH:~/happy_bin"' > ~/.bash_profileĪnd if you’re unsure of what’s going on here, be sure to visit the modifying your PATH page.Īs explained above, most things we install here will be put in a directory in our home location called ~/happy_bin, so pay attention to modify any code here accordingly if you want to put things somewhere else. For the sake of simplicity, many tools we use in tutorials on this site are going to be put in a directory called ~/happy_bin. As we covered here, a list of directories that are scanned for programs automatically by your computer is stored in the special variable called “PATH”. Often a big part of getting things to work properly is having them in a location on the computer that you can access no matter where you are. The examples here so far are all binaries (as I’ve been selecting programs like that on purpose for ease of use in tutorials), but I will try to get an example up soon of installing from source. There is a good explanation on stack exchange about some of these differences. As usual there is a give and take here, binaries are easier to grab and get running, but you have more freedom and often access to the newest developments when installing something from its source code.
GITHUB MAC COMMAND LINE TUTORIAL DOWNLOAD
This is in contrast to programs that you need to download and then “compile from source” – you need to “build” the program first in order for it to work. Programs stored in these formats can just be downloaded and then utilized usually with no other work required – they are already “built” when you download them. You may have heard or read an expression before referring to whether there is a binary or executable available for download for a particular program. I plan to add a section soon covering those differences, but for now these are examples for installing on a Mac personal computer and would need to be adjusted for other systems. Many programs have differences between which version we’d need and how we’d install them on our personal computer vs installing on a server. This page will be an ongoing list of the installation process for any of the tools used on tutorials from this site, and they will hopefully serve as examples to help guide you through installing other things.
GITHUB MAC COMMAND LINE TUTORIAL HOW TO
What’s required on our end to get something working properly varies by the tool, and most that are highly used by people have excellent documentation on how to properly download and install them. If you’re working towards more bioinformatic-leaning applications, you’re certainly also going to need to download and/or install lots of tools that don’t come standard. If you are new to this stuff and want to be able to follow the examples here more closely, be sure to familiarize yourself with what the PATH is here and to follow these instructions in order to create that directory and add it to your PATH.Īs we’ve seen in the Unix crash course and real-life examples sections, you can do some amazing things with standard Unix commands as far as manipulating plain-text files goes. The installation examples here all download and install things into a directory called ~/happy_bin.